PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002481.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 128aa    MW: 13759.5 Da    PI: 8.9064
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002481.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.82.4e-072446123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             + C+ Cg+ F+r+  L  H+r+H
  Itr_sc002481.1_g00006.1 24 HICKVCGRQFNRRQALSGHMRLH 46
                             68*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.1E-72149No hitNo description
Gene3DG3DSA:3.30.160.603.9E-62446IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.9E-42446IPR015880Zinc finger, C2H2-like
PfamPF139124.1E-72446IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2192446IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MSRNNANGSS SFNSPPPAQP QQNHICKVCG RQFNRRQALS GHMRLHDNRG WRSVCPHFFN  60
RDYLANVPPI LGIAAVGGQV AAAPPPPIAA PPADNAPLAQ ADAAATLPDL NEPRYYHVPD  120
LNFPPPPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.15e-06C2H2-like zinc finger protein